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Cortés-Ortiz, L., Duda, Jr., T.F., Canales-Espinosa, D., García-Orduña, F. Rodríguez-Luna, E., Bermingham, E. 2007. Hybridization in large-bodied New World primates. Genetics 176:2421-2425.
Duda, T.F., Jr., Rolán, E. 2005. Explosive radiation of Cape Verde Conus, a marine species flock. Molecular Ecology 14:267-272. [Duda & Rolán 2005.pdf]
Duda, T.F., Jr., Kohn, A.J. 2005. Species-level phylogeography and evolutionary history of the hyperdiverse marine gastropod genus Conus. Molecular Phylogenetics and Evolution 34:257-272. [Duda & Kohn 2005.pdf]
Duda, T.F., Jr., Palumbi, S.R. 2004. Gene expression and feeding ecology: evolution of piscivory in the venomous gastropod genus Conus. Proceedings of the Royal Society of London, Series B, Biological Sciences 271:1165-1171. [Duda et al. 2004.pdf]
Duda, T.F., Jr., Bingham, J-P., Livett, B.G., Kohn, A.J., et al. 2004. How much at risk are cone snails? Science 303:955-957.
Duda, T.F., Jr., Vanhoye, D., Nicolas, P. 2002. Roles of diversifying selection and coordinated evolution in the evolution of amphibian antimicrobial peptides. Molecular Biology and Evolution 19:858-864. [Duda et al. 2002.pdf]
Duda, T.F., Jr., Kohn, A.J., Palumbi, S.R. 2001. Origins of diverse feeding ecologies within Conus, a genus of venomous marine gastropods. Biological Journal of the Linnean Society 73:391-409. [Duda et al. 2001.pdf]
Duda, T.F., Jr., Palumbi, S.R. 2000. Evolutionary diversification of multi-gene families: allelic selection of toxins in predatory cone snails. Molecular Biology and Evolution 17:1286-1293. [Duda & Palumbi 2000.pdf]
Duda, T.F., Jr., Palumbi, S.R. 1999. Developmental shifts and species selection in gastropods. Proceedings of the National Academy of Sciences USA 96:10272-10277. [Duda & Palumbi 1999-larvae.pdf]
Duda, T.F., Jr., Palumbi, S.R. 1999. Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus. Proceedings of the National Academy of Sciences USA 96:6820-6823. [Duda & Palumbi 1999-toxins.pdf]
Duda, T.F., Jr., Palumbi, S.R. 1999. Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations. Marine Biology 134:705-710. [Duda & Palumbi 1999-shrimp.pdf]
France, S.C., Tachino, N., Duda, T.F., Jr., Shleser, R.A., Palumbi, S.R. 1999. Intraspecific genetic diversity in the marine shrimp Penaeus vannamei: multiple polymorphic elongation factor-1 alpha loci revealed by intron sequencing. Marine Biotechnology 1:261-268.